9.23.24

Too hot to help? Friendship in a changing climate

This coral has lost its algae partners, causing it to be bleached. (Photo by Coffroth Lab)

The activities are as follows:

When given emergency instructions on a flight, you’re told to put on your own oxygen mask before assisting others. This is because if you run out of oxygen, you won’t be able to help others. Turning to nature, this same idea may be true when we look at relationships between two species.

Coral and certain types of algae form a mutualism where both species benefit from the partnership. Coral provides a safe home for algae, and algae make food for coral through photosynthesis. However, climate change is causing warmer ocean temperatures that stress the relationship. If the water gets too hot for algae, they can’t make food for the coral anymore. To survive, the algae must help themselves before they can help the coral.

Casey is a biologist interested in studying the changing coral-algae mutualism. He wants to know whether different individuals of the same algae species do better than others in warming waters. Individuals of the same species can have different traits. For example, each human person belongs to the same species, but each of us has different traits. This is largely because of our genetic composition for these traits, or genotypes. Casey set out to test if different algae genotypes were capable of being better mutualists under warm temperatures. If he could identify these genotypes, then maybe that could help protect coral in the future.

Casey gets a sample of algae from a flask in his lab. (Photo by David J. Hawkins)

Casey and his graduate student, Richard, set up experiments to test algae genotypes to see how well they performed at different temperatures. Casey and Richard grew five different genotypes of the same algae species in the lab. They used a pipette to transfer 10,000 cells of each genotype and placed them in flasks at two different temperatures. The lower temperature treatment is one where corals and their algae are usually happy: 26 degrees Celsius. The higher temperature treatment is where coral’s relationship with algae starts to break down: 30 degrees Celsius. At that temperature, many corals lose their algae entirely, in a process called coral bleaching.

Casey and Richard measured two things – the total amount of photosynthesis and the total amount of respiration happening in each flask. They did this by tracking what happened to oxygen over time. When there is a lot of photosynthesis, oxygen goes up, and when there is a lot of respiration, oxygen goes down. Two conditions are best for the mutualism. First, a lot of photosynthesis means the algae produced more food that they can share with coral. Second, less respiration means the algae used less of the food for themselves and have more to share with the coral. In summary, when the algae is stressed it does less photosynthesis and more respiration, making it a worse trading partner for coral. The best algae partner is the genotype that can photosynthesize the most and respire the least. The net food available is how much of the food made through photosynthesis is available after subtracting the food used by respiration.

Featured scientists: Casey terHorst (he/him) and Richard Rachman (he/him)

from California State University Northridge

Flesch–Kincaid Reading Grade Level = 8.9

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8.2.24

A plant breeder’s quest to improve perennial grain

Hannah takes notes on the date of flowering in a Kernza® field in Southwest Minnesota.

The activities are as follows:

Kernza® is a new grain crop that is similar to wheat. It can be ground into flour and used in bread, cookies, crackers and more! Unlike wheat, the rest of the plant can be eaten by livestock such as cattle. Another difference is that Kernza® is a perennial, meaning it grows in the ground for multiple years, whereas annual wheat only grows for one year. However, the challenge is that annual wheat makes more grain and is easier to harvest and sell. This means farmers currently prefer growing annual wheat over Kernza®.

One way to address this mismatch between annual and perennial crops is through selective breeding. This is when humans select individual plants with traits that are desirable for a specific reason. This group of individuals are strategically bred together. The breeder’s goal is to shift the traits over generations. Scientists have only been working on breeding Kernza® for the past few decades; in comparison, humans started selecting annual wheat traits over 10,000 years ago! That is a lot of time to get the traits we are looking for.

Kernza® breeders are working on improving the same traits that have already been improved in annual wheat, including larger seed size. Kernza® scientists follow two main steps to breed plants 1) they select the best individuals from the population and 2) they intercross those individuals to create the next generation, or breeding cycle. With each breeding cycle, plant breeders see a slight improvement in the traits they selected.

Breeders can select plants based on phenotypes, genotypes, or both. Historically, plant breeders have selected based on desired phenotypes, or visible traits, only. Modern plant breeding can take advantage of the fact that we can now look at genotypes, or the genetic makeup, of individual plants quickly and at low costs. Scientists can use this information to make quicker breeding improvements, so we don’t have to wait another 10,000 years for high-yielding Kernza®!

A scientist pipettes DNA samples into an agarose gel to separate samples based on genotype using gel electrophoresis.

Hannah is a scientist currently working on Kernza®. Hannah’s passion for plant breeding was ignited during her high school years. She discovered the captivating world of genetics in her AP Biology class. It was then that she first realized the potential for breeding crop plants to make them more productive and viable for human consumption.

Hannah decided to join other scientists who work on Kernza® at the University of Minnesota. Here, scientists have completed four breeding cycles and are about to start the fifth. Hannah wanted to see whether different genetic makeups (genotypes) lead to differences in seed size (phenotypes). Her goal was to look at each plants’ phenotype and genotype for seed size.

To genotype a plant, scientists collect a small piece of leaf tissue, extract the DNA, and send the DNA to a lab for sequencing. This process tells scientists the genetic makeup that ultimately leads to the traits that we see. Specifically, sequencing data identifies nucleotides, or genetic building blocks of each plant’s DNA. Plants have thousands of genes, which are made up of the DNA nucleotides A, T, C, and G.

Sequencing data can be recorded in several ways. One common way is as SNP data, or Single Nucleotide Polymorphism data. You can think of SNP data as the recipe for proteins. In a SNP dataset, each SNP represents a difference in a nucleotide. Similar to using a different ingredient in a recipe, different nucleotides can result in a different phenotype.

By looking at SNP data, plant breeders can identify differences in genotypes that lead to certain phenotypes. Hannah started by evaluating 1,000 Kernza® plants from the first four breeding cycles. Data on phenotypes had already been recorded for these plants. Hannah then collected SNP data to determine their genotypes as well. She was looking for a pattern between genotypes and phenotypes. If she sees that different genotypes have different phenotypes, scientists can then rely on genotypes to select individuals to breed in future breeding cycles.

Featured scientist: Hannah Stoll (she/her) from the University of Minnesota

Flesch–Kincaid Reading Grade Level = 8.9

Additional teacher resources related to this Data Nugget include: